Publications

Publications

Full List (>60 in total):

 

Publications

PubMed Bibliography

Google Scholar Profile

 

Ten selected recent publications:

 

Z. Li, Q. Yao, S. P. Dearth, M. R. Entler, H. F. Castro Gonzalez, J. K. Uehling, R. J. Vilgalys, G. B. Hurst, S. R. Campagna, J. L. Labbe, and C. Pan. (2017) Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system, Environmental Microbiology 19, 1041-1053

S. Bryson, Z. Li, F. Chavez, P. K. Weber, J. Pett-Ridge, R. L. Hettich, C. Pan, X. Mayali, and R. S. Mueller. (2017) Phylogenetically conserved resource partitioning in the coastal microbial loop, The ISME journal.

J. Marlow, C. T. Skennerton, Z. Li, K. Chourey, R. L. Hettich, C. Pan, and V. J. Orphan. (2016) Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities, Frontiers in Microbiology 7.

T.-H. Ahn, J. Chai, and C. Pan. (2015) Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance, Bioinformatics 31, 170-177.

C. Mosier, Z. Li, B. C. Thomas, R. L. Hettich, C. Pan, and J. F. Banfield. (2015) Elevated temperature alters proteomic responses of individual organisms within a biofilm community, ISME Journal 9, 180-194.

Y. Wang, G. Kora, B. P. Bowen, and C. Pan. (2014) MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics, Analytical Chemistry 86, 9496-9503.

Z. Li, Y. Wang, Q. Yao, N. B. Justice, T.-H. Ahn, D. Xu, R. L. Hettich, J. F. Banfield, and C. Pan. (2014) Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community, Nature Communications 5.

B. Haider, T.-H. Ahn, B. Bushnell, J. Chai, A. Copeland, and C. Pan. (2014) Omega: an Overlap-graph de novo Assembler for Metagenomics, Bioinformatics 30, 2717-2722.

J. Chai, G. Kora, T.-H. Ahn, D. Hyatt, and C. Pan. (2014) Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam, BMC Evolutionary Biology 14.

Y. Wang, T.-H. Ahn, Z. Li, and C. Pan. (2013) Sipros/ProRata: a versatile informatics system for quantitative community proteomics, Bioinformatics 29, 2064-2065.